Mesoscopic Reaction Diffusion Simulator
Quick start to making spatial stochastic models
After installing MesoRD download this SMBL model (tutorial.xml) and simulate it with subvolume size 0.5 um (visualise 8 molecules per subvolume). Next, open the SBML-file in a text editor and figure out how the SBML commands relate to the model. Try different parameters, change initial conditions and geometries. The details of the model is given in the MesoRD documentation. The model described by the SBML file and a MesoRD simulation is illustrated below:
