$Revision: 675 $
Copyright © 2011 Johan Elf, David Fange, Johan Hattne, Anel Mahmutovic
Copyright (c) 2004-2011 Johan Elf, David Fange, Johan Hattne, Anel Mahmutovic. Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.2 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the section entitled "GNU Free Documentation License".
This product includes software developed and copyright by
Makoto Matsumoto and Takuji Nishimura ( http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html)
Richard J. Wagner ( http://www-personal.umich.edu/~wagnerr/MersenneTwister.html)
and Jasper Bedaux ( http://www.bedaux.net/mtrand)
Roldan Pozo, Karin Remington, and Andrew Lumsdaine. ( http://math.nist.gov/sparselib++/).
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
The names of its contributors may not be used to endorse or promote products derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
This product includes software developed by the Apache Software Foundation (http://www.apache.org).
This product includes software developed by Ben Bornstein ( http://www.sbml.org/libsbml.html).
Table of Contents
List of Figures
UnitDefinition
Unit
Compartment
Species
SpeciesDiffusion
Diffusion
Species
Reaction
SpeciesReference
.
ModifierSpeciesReference
KineticLaw
MicroscopicParameters
.
AssociationRateConst
.
ReactionRadius
.
DegreeOfDiffusionControl
.
List of Tables
List of Examples
compartment
Primitiverectangle
Primitivecircle
Primitive